`cloudgene github-install`¶

Installs an application from a GitHub repo to your local repository.

This command is deprecated. Please use cloudgene install user/repo

Command¶

cloudgene github-install <owner>/<repository>[/<subdir>]

Parameter	Required	Description
`<repository>`	yes	The GitHub repository of the application

Install application from GitHub repository lukfor/hello-cloudgene:

cloudgene github-install lukfor/hello-cloudgene

Install application from a subdirectory in GitHub repository genepi/cloudgene-examples:

cloudgene github-install genepi/cloudgene-examples/fastqc

Install a certain version (tag or release):

cloudgene github-install lukfor/hello-cloudgene@v1.2.0